PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009615269.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 389aa    MW: 45190.7 Da    PI: 7.6298
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009615269.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.93.9e-53611891128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eel+++yLkkkv+++k++l +vi+evd++k+ePwd+++k+k     +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk +
  XP_009615269.1  61 VPPGFRFHPTEEELLQYYLKKKVANEKIDL-DVIQEVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI 154
                     69****************************.9***************964444222455************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +s +++ +g++ktLvfykgrap+g+k+dW+mheyrl
  XP_009615269.1 155 YS-NSRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 189
                     **.9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-5850234IPR003441NAC domain
PROSITE profilePS5100556.25461234IPR003441NAC domain
PfamPF023653.6E-2862189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MCPLHFFLDL YKFLYLSFSV SALTFIYSCT SFLLYSKSRT KQKIISMPDD MSISVNGQSQ  60
VPPGFRFHPT EEELLQYYLK KKVANEKIDL DVIQEVDLNK LEPWDIQEKC KIGSTPQNDW  120
YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKVIYSNSRR IGMRKTLVFY KGRAPHGQKS  180
DWIMHEYRLD DHINDHSCNI GVRKQHLYLH KVCNVSMGES TQEEGWVVCR IFKKKNHFKS  240
LEMVNPSISD TRINQRLYPN DEGALEQLLQ YMRNTCKEEN HANYDINFND KFMQLPTLDS  300
PNSSYGDFPK SINSEGGLNN WIAVDRLVAS HLNGQTNDNY NHDYQHQYSS NGGGGTTHNH  360
DYNEECDLWN FSRVSTNDHS LCHVSNIPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-49552409174Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869440.0JQ686944.1 Nicotiana tabacum cultivar SR1 NAC secondary wall thickening promoting factor 3 (NST3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615269.10.0PREDICTED: NAC domain-containing protein 43-like isoform X1
SwissprotQ84WP61e-124NAC43_ARATH; NAC domain-containing protein 43
TrEMBLV9LXI70.0V9LXI7_TOBAC; NAC secondary wall thickening promoting factor 3
STRINGPGSC0003DMT4000293211e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-115NAC family protein